Вопрос жизни. Энергия, эволюция и происхождение сложности — страница 65 из 71

// Journal of Molecular Evolution 46: 54–63 (1998).

Leipe, D. D., Aravind, L., and E. V. KooninDid DNA replication evolve twice independently? // Nucleic Acids Research 27: 3389–3401 (1999).

Lombard, J., López-García, P., and D. MoreiraThe early evolution of lipid membranes and the three domains of life // Nature Reviews Microbiology 10: 507–515 (2012).

Martin, W., and M. J. RussellOn the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells // Phil. Trans. R. Soc. B 358: 59–83 (2003).

Sousa, F. L., Thiergart, T., Landan, G., Nelson-Sathi, S., Pereira, I. A. C., Allen, J. F., Lane, N., and W. F. MartinEarly bioenergetic evolution // Phil. Trans. R. Soc. B 368: 20130088 (2013).

Глава 3. Энергия и начало жизни

Энергетические потребности на заре жизни

Lane, N., Allen, J. F., and W. MartinHow did LUCA make a living? Chemiosmosis in the origin of life // BioEssays 32: 271–280 (2010).

Lane, N., and W. MartinThe origin of membrane bioenergetics // Cell 151: 1406–1416 (2012).

Martin, W., Sousa, F. L., and N. LaneEnergy at life’s origin // Science 344: 1092–1093 (2014).

Martin, W. F.Hydrogen, metals, bifurcating electrons, and proton gradients: The early evolution of biological energy conservation // FEBS Letters 586: 485–493 (2012).

Russell, M., ed. Origins: Abiogenesis and the Search for Life. Cosmology Science Publishers, Cambridge MA (2011).

Эксперимент Миллера – Юри и “мир РНК”

Joyce, G. F.RNA evolution and the origins of life // Nature 33: 217–224 (1989).

Miller, S. L.A production of amino acids under possible primitive Earth conditions // Science 117: 528–529 (1953).

Orgel, L. E.Prebiotic chemistry and the origin of the RNA world // Critical Reviews in Biochemistry and Molecular Biology 39: 99–123 (2004).

Powner, M. W., Gerland, B., and J. D. SutherlandSynthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions // Nature 459: 239–242 (2009).

Термодинамика далеких от равновесия процессов

Morowitz, H.Energy Flow in Biology: Biological Organization as a Problem in Thermal Physics. Academic Press, New York (1968).

Prigogine, I.The End of Certainty: Time, Chaos and the New Laws of Nature. Free Press, New York (1997).

Russell, M. J., Nitschke, W., and E. BranscombThe inevitable journey to being // Phil. Trans. R. Soc. B 368: 20120254 (2013).

Происхождение катализа

Cody, G.Transition metal sulfides and the origins of metabolism // Annual Review Earth and Planetary Sciences 32: 569–599 (2004).

Russell, M. J., Allen, J. F., and E. J. Milner-WhiteInorganic complexes enabled the onset of life and oxygenic photosynthesis / In: Allen, J. F., Gantt, E., Golbeck, J. H., and B. OsmondEnergy from the Sun: 14th International Congress on Photosynthesis. Springer, Heidelberg (2008).

Russell, M. J., and W. MartinThe rocky roots of the acetyl-CoA pathway // Trends in Biochemical Sciences 29: 358–363 (2004).

Реакции дегидратации в воде

Benner, S. A., Kim, H.-J., and M. A. CarriganAsphalt, water, and the prebiotic synthesis of ribose, ribonucleosides, and RNA // Accounts of Chemical Research 45: 2025–2034 (2012).

Pratt, A. J.Prebiological evolution and the metabolic origins of life // Artificial Life 17: 203–217 (2011).

Zwart, I. I. de, Meade, S. J., and A. J. PrattBiomimetic phosphoryl transfer catalysed by iron(II) – mineral precipitates // Geochimica et Cosmochimica Acta 68: 4093–4098 (2004).

Формирование протоклеток

Budin, I., Bruckner, R. J., and J. W. SzostakFormation of protocell-like vesicles in a thermal diffusion column // Journal of the American Chemical Society 131: 9628–9629 (2009).

Errington, J.L-form bacteria, cell walls and the origins of life // Open Biology 3: 120143 (2013).

Hanczyc, M., Fujikawa, S., and J. SzostakExperimental models of primitive cellular compartments: encapsulation, growth, and division // Science 302: 618–622 (2003).

Mauer, S. E., and P. A. MonndardPrimitive membrane formation, characteristics and roles in the emergent properties of a protocell // Entropy 13: 466–484 (2011).

Szathmáry, E., Santos, M., and C. FernandoEvolutionary potential and requirements for minimal protocells // Topics in Current Chemistry 259: 167–211 (2005).

Возникновение репликации

Cairns-Smith, G.Seven Clues to the Origin of Life. Cambridge University Press, Cambridge (1990).

Costanzo, G., Pino, S., Ciciriello, F., and E. Di MauroGeneration of long RNA chains in water // Journal of Biological Chemistry 284: 33206–33216 (2009).

Koonin, E. V., and W. MartinOn the origin of genomes and cells within inorganic compartments // Trends in Genetics 21: 647–654 (2005).

Mast, C. B., Schink, S., Gerland, U., and D. BraunEscalation of polymerization in a thermal gradient // Proceedings of the National Academy of Sciences USA 110: 8030–8035 (2013).

Mills, D. R., Peterson, R. L., and S. SpiegelmanAn extracellular Darwinian experiment with a self-duplicating nucleic acid molecule // Proceedings National Academy Sciences USA 58: 217–224 (1967).

Открытие глубоководных гидротермальных источников

Baross, J. A., and S. E. HoffmanSubmarine hydrothermal vents and associated gradient environments as sites for the origin and evolution of life // Origins Life Evolution of the Biosphere 15: 327–345 (1985).

Kelley, D. S., Karson, J. A., Blackman, D. K., et al. An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30 degrees N. // Nature 412: 145–149 (2001).

Kelley, D. S., Karson, J. A., Früh-Green, G. L., et al. A serpentinite-hosted submarine ecosystem: the Lost City Hydrothermal Field // Science 307: 1428–1434 (2005).

Пиритный пуллинг и железосерный мир

Duve, C. de, and S. MillerTwo-dimensional life? // Proceedings National Academy Sciences USA 88: 10014–10017 (1991).

Huber, C., and G. WäctershäuserActivated acetic acid by carbon fixation on (Fe,Ni)S under primordial conditions // Science 276: 245–247 (1997).

Miller, S. L., and J. L. BadaSubmarine hot springs and the origin of life // Nature 334: 609–611 (1988).

Wäctershäuser, G.Evolution of the first metabolic cycles // Proceedings National Academy Sciences USA 87: 200–204 (1990).

Wäctershäuser, G.From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya // Phil. Trans. R. Soc. B 361: 1787–1806 (2006).

Щелочные гидротермальные источники

Martin, W., Baross, J., Kelley, D., and M. J. RussellHydrothermal vents and the origin of life // Nature Reviews Microbiology 6: 805–814 (2008).

Martin, W., and M. J. RussellOn the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells // Phil. Trans. R. Soc. B 358: 59–83 (2003).

Russell, M. J., Daniel, R. M., Hall, A. J., and J. SherringhamA hydrothermally precipitated catalytic iron sulphide membrane as a first step toward life // Journal of Molecular Evolution 39: 231–243 (1994).

Russell, M. J., Hall, A. J., Cairns-Smith, A. G., and P. S. BratermanSubmarine hot springs and the origin of life // Nature 336: 117 (1988).

Russell, M. J., and A. J. HallThe emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front // Journal Geological Society London 154: 377–402 (1997).

Серпентинизация

Fyfe, W. S.The water inventory of the Earth: fluids and tectonics // Geological Society of London Special Publications 78: 1–7 (1994).

Russell, M. J., Hall, A. J., and W. MartinSerpentinization as a source of energy at the origin of life // Geobiology 8: 355–371 (2010).

Sleep, N. H., Bird, D. K., and E. C. PopeSerpentinite and the dawn of life // Phil. Trans. R. Soc. B 366: 2857–2869 (2011).

Химия катархейских океанов

Arndt, N., and E. NisbetProcesses on the young Earth and the habitats of early life // Annual Reviews Earth Planetary Sciences 40: 521–549 (2012).

Pinti, D.The origin and evolution of the oceans // Lectures Astrobiology 1: 83–112 (2005).

Russell, M. J., and N. T. ArndtGeodynamic and metabolic cycles in the Hadean // Biogeosciences 2: 97–111 (2005).

Zahnle, K., Arndt, N., Cockell, C., Halliday, A., Nisbet, E., Selsis, F., and N. H. SleepEmergence of a habitable planet // Space Science Reviews 129: 35–78 (2007).

Термофорез

Baaske, P., Weinert, F. M., Duhr, S., et al. Extreme accumulation of nucleotides in simulated hydrothermal pore systems // Proceedings National Academy Sciences USA 104: 9346–9351 (2007).

Mast, C. B., Schink, S., Gerland, U., and D. BraunEscalation of polymerization in a thermal gradient // Proceedings National Academy Sciences USA 110: 8030–8035 (2013).